Uses of Interface
jebl.evolution.align.scores.ScoreMatrix
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Packages that use ScoreMatrix Package Description jebl.evolution.align.scores -
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Uses of ScoreMatrix in jebl.evolution.align.scores
Classes in jebl.evolution.align.scores that implement ScoreMatrix Modifier and Type Class Description class
AminoAcidScores
class
Blosum45
class
Blosum50
class
Blosum55
class
Blosum60
class
Blosum62
class
Blosum65
class
Blosum70
class
Blosum75
class
Blosum80
class
Blosum85
class
Blosum90
class
Hamming
class
JukesCantor
Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.class
NucleotideScores
class
Pam100
class
Pam110
class
Pam120
class
Pam130
class
Pam140
class
Pam150
class
Pam160
class
Pam170
class
Pam180
class
Pam190
class
Pam200
class
Pam210
class
Pam220
class
Pam230
class
Pam240
class
Pam250
class
Scores
Base class for all score matrices in the package.class
SubstScoreMatrix
Methods in jebl.evolution.align.scores with parameters of type ScoreMatrix Modifier and Type Method Description static Scores
Scores. forMatrix(ScoreMatrix scoreMatrix)
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